Whoa, do tell more on the glitch. I'd like to avoid tearing apart my motor this season if possible. I'm sorry to hear your motor died though
From reading the msextra forums, I know theres a few other people out there running the stock toyota 36-2 crank trigger wheel out there. I wonder if the ems-pro has some major VR sensor drama or what? When I was idling the other day i turned on the tooth logger in MegaTunix and it looked great, just like your old screenshots.
My 1995 Avalon 1MZ came with the 6 cop. The rear valve cover has holes for them to bolt down to. They have to be the smaller style coil though, because the big one with the lug on it physically can't fit in that area (not to mention you'd have a live spark lug arcing everywhere).
I plan on running two of the 3 coil style igniters in batch fire. Right now I'm running the 3 style like you have running.