I keep finding references of 89621-26010 and 89621-16020 both being compatible with gen3s. I do know neither 89621-12010 or 89621-12050 will work.
89621-12010 is also found on 90 5SFE engines - so in the initial post it says same as 5SFE, you should amend that to same as 91+ 5SFE, cause a 90 5S is different.
I have a gen3 igniter at home. Ill check the PN on it too.
I keep amending this post. Im adding to it as Im finding it.
Here is a link to a site that tells you how to swap gen2 to gen3 electronics using ignitor 89621-26010
How to 3SGTE gen 2 to Gen 3 convertion
Here is a link to a thread on the other board where a user Ishii actually performs the gen3 electronics swap onto a gen2 engine using all gen3 bits, and hes using ignitor 89621-16020.
MR2 Owners Club Message Board™
So I guess you can use either/or?